Commit ae7b0c57 authored by tim.scherr's avatar tim.scherr
Browse files

script bugfixes

parent 3501d739
......@@ -13,7 +13,7 @@ python ./cell_eval.py --cell_type "Fluo-C3DH-A549" --mode "GT" --model "Fluo-C3D
python ./cell_eval.py --cell_type "Fluo-C3DH-H157" --mode "GT" --model "Fluo-C3DH-H157_GT+ST_kit-sch-ge" --batch_size 8 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-C3DL-MDA231" --mode "GT" --model "Fluo-C3DL-MDA231_GT+ST_kit-sch-ge" --batch_size 8 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-N2DH-GOWT1" --mode "GT" --model "Fluo-N2DH-GOWT1_GT+ST_kit-sch-ge" --batch_size 16 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-N3DH-CE" --mode "GT+" --model "Fluo-N3DH-CE_GT+ST_kit-sch-ge" --batch_size 8 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-N3DH-CE" --mode "GT" --model "Fluo-N3DH-CE_GT+ST_kit-sch-ge" --batch_size 8 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-N2DL-HeLa" --mode "GT" --model "Fluo-N2DL-HeLa_GT+ST_kit-sch-ge" --batch_size 16 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "Fluo-N3DH-CHO" --mode "GT" --model "Fluo-N3DH-CHO_GT+ST_kit-sch-ge" --batch_size 8 --th_cell 0.07 --th_seed 0.35 0.45
python ./cell_eval.py --cell_type "PhC-C2DH-U373" --mode "GT" --model "PhC-C2DH-U373_GT+ST_kit-sch-ge" --batch_size 16 --th_cell 0.07 --th_seed 0.35 0.45
......
......@@ -2,7 +2,7 @@ eval "$(conda shell.bash hook)"
conda activate kit-sch-ge-2021-cell_segmentation_ve
# Specialized models trained on GTs and STs from the reproduced kit-sch-ge training dataset (iterations=1 has been used from now on since we were running out of time for the challenge)
# Specialized models trained on GTs and STs from the reproduced kit-sch-ge training dataset
python ./train.py --cell_type "BF-C2DL-HSC" --act_fun "relu" --iterations 1 --mode "GT+ST" --optimizer "adam" --split "kit-sch-ge"
python ./train.py --cell_type "BF-C2DL-HSC" --act_fun "mish" --iterations 1 --mode "GT+ST" --optimizer "ranger" --split "kit-sch-ge"
......
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