croposp: move croposp to its own directory

src/ts/croposp/COPYING

+this is <COPYING>
+============================================================================
+ts/wf: time series waveform filters
+============================================================================
+
+Copyright (C) 1996, 2011 by Thomas Forbriger 
+
+----
+These programs are free software; you can redistribute them and/or modify
+them under the terms of the GNU General Public License as published by
+the Free Software Foundation; either version 2 of the License, or
+(at your option) any later version. 
+
+These programs are distributed in the hope that they will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+----
+
+----- END OF COPYING ----- 

src/ts/croposp/Makefile

+# this is <Makefile>
+# ----------------------------------------------------------------------------
+# 
+# Copyright (c) 2005 by Thomas Forbriger (BFO Schiltach) 
+# 
+# time series waveform filters
+#
+# ----
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version. 
+# 
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+# 
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+# ----
+#
+#
+# Makefile fuer tools /src/ts/wf
+#
+# 22/01/2001      introduced smoos and did some "tidy up"
+# 24/10/2001      introduced siggen
+# 24/05/2001      introduced tsfilt
+# 
+# REVISIONS and CHANGES 
+#    11/07/2005   V1.0   Thomas Forbriger (thof)
+#    07/12/2007   V1.1   default Fortran compiler now is g77
+#    17/12/2007   V1.2   moved to gfortran
+#    08/10/2010   V1.3   migrate to new SVN environment
+#                        - discard f2c fallback
+#                        - use FFTW3
+#    10/02/2011   V1.4   distinguish between compilation and installation
+#    24/06/2011   V1.5   moved tests to distinguished Makefiles
+#    25/05/2012   V1.6	 link siggen against libfapidxx (damb)
+#    03/06/2012   V1.7   to be consistent with other programs: distinguish
+#                        siggen and siggenx (being linked against libsff and
+#                        libfapidxx, respectively)
+#    11/01/2013   V1.8   added sigscale to program targets
+#    17/04/2013   V1.9   lisousi has its own place now (moved source code)
+#    28/10/2013   V1.10  implemented libfapidxx-version of suseix
+#    02/01/2014   V1.11  removed signal generators, added tisli suspect
+#    01/02/2014 thof:    rewrite all linker rules with libraries in
+#                        proper order
+#    19/03/2016 thof:    tidofi requires libgsl for filter GaussianNoise
+#    25/12/2018 thof:    add new program croposp
+# 
+# ============================================================================
+
+PROGRAMS=tsfilt stufi rotate coro xyz2uvw susei suseix evelo \
+  smoos dise foutra teseco resaseda gatherdiff \
+  autocorr cross tidofi sigfit noisymize sigval fidasexx soutifu \
+  deconv geophone sigscale tisli suspect evelox croposp
+
+.PHONY: all
+all: install doc
+
+.PHONY: list-programs
+list-programs:
+	echo $(PROGRAMS) | tr ' ' '\n' | sort
+
+.PHONY: doc
+doc: doxydoc
+
+.PHONY: install
+install: $(addprefix $(LOCBINDIR)/,$(PROGRAMS))
+$(LOCBINDIR)/%: %
+	mkdir -pv $(LOCBINDIR)
+	/bin/mv -fv $< $(LOCBINDIR)
+
+CHECKVAR=$(if $($(1)),,$(error ERROR: missing variable $(1)))
+CHECKVARS=$(foreach var,$(1),$(call CHECKVAR,$(var)))
+
+$(call CHECKVARS,LOCINCLUDEDIR LOCLIBDIR LOCBINDIR)
+$(call CHECKVARS,TF_LINK_FORTRAN TF_LINK_PGPLOT)
+
+FORTRANLIB=$(TF_LINK_FORTRAN)
+
+# use STATIC=-static to produce statically linked binaries
+STATIC=
+FLAGS += $(MYFLAGS)
+CPPFLAGS=$(addprefix -I,$(LOCINCLUDEDIR) $(subst :, ,$(SERVERINCLUDEDIR))) \
+  $(FLAGS)
+FFLAGS += -ff2c -Wall -ffixed-line-length-0 -fno-backslash $(FLAGS)
+CXXFLAGS+=-Wall $(FLAGS)
+LDFLAGS=$(addprefix -L,$(LOCLIBDIR) $(subst :, ,$(SERVERLIBDIR))) $(STATIC)
+
+#----------------------------------------------------------------------
+# standard edit targets
+.PHONY: clean
+clean: ; 
+	-find . -name \*.bak | xargs --no-run-if-empty /bin/rm -v
+	-find . -name \*.d | xargs --no-run-if-empty /bin/rm -v
+	-/bin/rm -vf flist *.o *.xxx *.ps *~ $(PROGRAMS)
+
+TESTCASEMAKE=$(filter-out %.bak,$(wildcard testcases/Makefile*))
+
+# the frame of doxygen documentation is placed in text files
+DOXYTXT=$(wildcard doxygen*.txt */doxygen*txt)  
+
+EDITFILES=Makefile README $(wildcard *.cfg) COPYING $(DOXYTXT) \
+	    $(filter-out %.bak,$(wildcard */README*))
+EDITSRC=$(wildcard *.cc *.h *.c *.f *.gpt *.inc)
+EDITTESTS=$(wildcard testcases/*.par) $(wildcard testcases/*.tpl) \
+    $(TESTCASEMAKE) $(wildcard testcases/*.gpt)
+
+flist: $(wildcard *.txt *.c *.f *.h *.inc *_text.txt Makefile *.cc *.gpt) \
+  doxydoc.cfg README COPYING $(DOXYTXT) $(EDITFILES) \
+  $(wildcard testcases/*.par) $(wildcard testcases/*.tpl) \
+  $(TESTCASEMAKE) $(wildcard testcases/*.gpt) $(TF_EDIT)
+	echo $(filter $(EDITFILES),$^) | tr ' ' '\n' | sort > $@
+	echo "---- source code ----" >> $@
+	echo $(filter $(EDITSRC),$^) | tr ' ' '\n' | sort >> $@
+	echo "---- Fortran source files only ----" >> $@
+	echo $(sort $(filter %.f,$^)) | tr ' ' '\n' >> $@
+	echo "---- C++ source files only ----" >> $@
+	echo $(sort $(filter %.cc,$^)) | tr ' ' '\n' >> $@
+	echo "---- test cases ----" >> $@
+	echo $(sort $(filter $(EDITTESTS),$^)) | tr ' ' '\n' >> $@
+	echo "----" >> $@
+	echo $(filter-out $(EDITFILES) $(EDITSRC) $(EDITTESTS),$^) \
+	  | tr ' ' '\n' | sort >> $@
+
+.PHONY: edit
+edit: flist; vim $<
+#----------------------------------------------------------------------
+# pattern rules
+
+%.o: %.f; $(FC) -c -o $@ $< $(FFLAGS)
+
+#----------------------------------------------------------------------
+# description and online texts
+%.cc %.h: %_help.txt
+	echo "// DO NOT EDIT: this file is automatically derived from $<" \
+	  > $(patsubst %.txt,%.h,$<)
+	echo "extern char $(patsubst %.txt,%,$<)[];" >> $(patsubst %.txt,%.h,$<)
+	echo "// DO NOT EDIT: this file is automatically derived from $<" \
+	  > $(patsubst %.txt,%.cc,$<)
+	echo "#include \"$(patsubst %.txt,%.h,$<)\"" >> $(patsubst %.txt,%.cc,$<)
+	echo "char $(patsubst %.txt,%,$<)[]=" >> $(patsubst %.txt,%.cc,$<)
+	echo "{" >> $(patsubst %.txt,%.cc,$<)
+	cat $< | egrep -v '^#' | sed -e 's/"/\\"/g' \
+	  | sed -e 's/$$/\\n"/' | sed -e 's/^/  "/'\
+	  >> $(patsubst %.txt,%.cc,$<)
+	echo "};" >> $(patsubst %.txt,%.cc,$<)
+
+#----------------------------------------------------------------------
+# dependencies
+%.d: %.cc
+	$(SHELL) -ec '$(CXX) -M $(CPPFLAGS) $< \
+      | sed '\''s,\($(notdir $*)\)\.o[ :]*,$(dir $@)\1.o $@ : ,g'\'' \
+        > $@; \
+      [ -s $@ ] || rm -f $@'
+
+include $(patsubst %.txt,%.d,$(wildcard *_help.txt)) 
+include $(patsubst %.cc,%.d,$(wildcard *.cc)) 
+
+#----------------------------------------------------------------------
+# typical combinations of libraries
+LIBDATRWXX=-ldatrwxx -lsffxx -ltime++ -lgsexx -laff
+LIBFAPIDXX=-lfapidxx $(LIBDATRWXX)
+LIBTSIOXX=-ltsioxx -ltsxx -ltfxx $(LIBDATRWXX) -lgsl -lgslcblas
+
+#----------------------------------------------------------------------
+# binary executable targets
+# -------------------------
+#
+# Fortran programs
+# ----------------
+#
+
+xyz2uvw tisli susei smoos rotate evelo coro: %: %.o
+	$(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lsff -ltf
+
+tsfilt stufi: %: %.o
+	$(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lseife -lsff -ltf
+
+suspect dise: %: %.o
+	$(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lsffu -ltime -lsff -ltf
+	 
+# Fortran programs with libfapidxx support
+# ----------------------------------------
+
+evelox suseix: %x: %.o
+	$(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -ltf  $(LIBFAPIDXX) 
+#
+# C++ programs
+# ------------
+
+sigval sigscale geophone gatherdiff autocorr: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  $(LIBDATRWXX) -ltfxx
+
+tidofi: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -ltsxx -lcseife $(LIBDATRWXX) -ltfxx -lgsl -lgslcblas
+
+fidasexx: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -llinearxx -lpgplotxx -lcpgplot \
+	  $(LIBDATRWXX) -ltfxx \
+	  $(TF_LINK_PGPLOT) $(TF_LINK_FORTRAN) \
+	  -llapack
+
+sigfit: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -llinearxx \
+	  $(LIBDATRWXX) -ltfxx \
+	  -llapack 
+
+resaseda: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -ltsxx $(LIBDATRWXX) -ltfxx
+
+teseco: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  $(LIBTSIOXX)
+
+noisymize: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  $(LIBTSIOXX) 
+
+cross fregra foutra deconv: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lfourierxx $(LIBTSIOXX) -lfftw3 
+
+croposp: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lpsdxx -lfourierxx $(LIBTSIOXX) -lfftw3 
+
+soutifu: \
+  %: %.o
+	$(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ \
+	  -lstfinv -lfourierxx $(LIBTSIOXX) -lfftw3
+
+#======================================================================
+# documentation part
+# ------------------
+#
+# targets commonly used:
+# ----------------------
+#
+# make doxyclean        removes all documentation
+# make doxydoc          creates doxygen documentation in the DOXYWWWPATH
+# make doxyview         creates doxygen documentation and launches netscape to
+#                       browse in the documentation
+# make doxyconf         edit the doxygen configuration file
+#
+# If you launch "make doxydoc" the documentation will be written to
+# DOXYWWWPATH (see below). This is meant to export the documentation through
+# your homepage. The doxyfull directory is just a symbolic link to this
+# directory.
+#
+
+$(call CHECKVARS,TF_WWWBASEDIR TF_BROWSER)
+
+DOXYWWWPATH=$(TF_WWWBASEDIR)/tswf
+
+.PHONY: doxyclean doxyview doxydoc doxyconf
+
+doxyclean: ;/bin/rm -rfv $(DOXYWWWPATH)
+
+DOXYSRC=$(DOXYTXT) $(wildcard *.h *.cc *.f)
+
+# create doxygen intermediate configuration
+PWD=$(shell env pwd)
+doxydoc.xxx: doxydoc.cfg
+	sed 's,<OUTPUTDIRECTORY>,$(DOXYWWWPATH),g;s,<STRIPFROMPATH>,$(PWD),g' \
+	  $< > $@
+# create commented version of doxygen configuration
+doxycomm.xxx: doxydoc.cfg
+	/bin/cp -vf $< $@; doxygen -u $@
+
+$(DOXYWWWPATH)/html/index.html: doxydoc.xxx $(DOXYSRC)
+	mkdir -vp $(DOXYWWWPATH)
+	doxygen $<
+
+doxydoc: $(DOXYWWWPATH)/html/index.html
+
+doxyview: $(DOXYWWWPATH)/html/index.html
+	$(TF_BROWSER) file:$< &
+
+# ----- END OF Makefile ----- 

src/ts/croposp/README

+this is <README>
+============================================================================
+ts/wf: time series waveform filters
+============================================================================
+
+This is a collection of various filter programs which can be used to
+manipulate time series data. The area of application ranges from long period
+seismology to shallow seismics.
+
+Some of the programs support only SFF data files. See usage information (by
+calling the program with option '-help') for details. Some Fortran programs
+support linking against libfapidxx. They commonly are provided in form of two
+binary executables (e.g. susei: SFF support only; suseix: supports all
+libdatrwxx formats). See variable PROGRAMS in Makefile.
+
+Currently maintained programs:
+
+Waveform filters
+----------------
+Programs provide frequency filters (high-pass, low-pass, etc), average and
+trend removal, time domain tapers, etc. 
+  stufi     filter SFF data files (uses seife filters by E. Wielandt)
+  tidofi    filter data files in various formats
+  tsfilt    filter two-column ASCII files (uses seife filters by E. Wielandt)
+
+Vector signal component rotation
+--------------------------------
+  coro      select a spatial vector component from three component data
+  rotate    rotate horizontal components
+  xyz2uvw   rotate to internal STS-2 components and vice versa
+
+Multi-signal
+------------
+  dise      calculate waveform residuals of selected traces from two input files
+  gatherdiff calculate waveform residuals of full shot gathers
+  sigfit    find linear regression coefficients for a set of trial signals
+  susei     stack seismograms from two or more files
+  suspect   stack seismograms after shifting to source origin time
+  teseco    apply signal corrections (like barometric pressure correction)
+
+Transformation
+--------------
+  evelo     calculate Hilbert transform, signal envelope, etc.
+  foutra    apply Fourier transformation (optionally calculates PSD)
+
+  fregra    spectrogram for unevenly sampled frequencies (not finished)
+
+Correlation and Convolution
+---------------------------
+  autocorr  calculate autocorrelation of signals
+  cross     cross-correlate signals
+  deconv    deconvolve one signal with another
+  noisymize convolve signals with random noise
+
+Resampling
+----------
+  resaseda  apply signal interpolation in the time domain
+  smoos     apply signal interpolation by spectral extension
+
+Miscellaneous
+-------------
+  fidasexx  scale shot gathers to compile homogeneous data set
+  geophone  derive geophone response and create filter control file
+  sigscale  scale SG056 auxilliary data to physical units
+  sigval    extract waveform properties like rms and write to table
+  soutifu   find optimal source wavelet correction filter 
+  tisli     extract time slices from multi-receiver data
+
+Test signals
+------------
+Test signal generators formerly present in this directory have been moved to
+src/synt/misc. They may as well still be necessary for the filter test
+procedures defined in subdirectory testcases
+
+============================================================================
+Test cases
+----------
+
+In subdirectory 'testcases' test cases for several filter programs are
+provided. These are not yet documented in detail. Please check Makefile in
+testcases, which serves as an entry point to the other Makefiles. Several of
+the test cases can be controlled by make variables to be passed on the command
+line. Test cases may require other external programs in order to create test
+waveforms. These programs can include programs for synthesis of full
+seismograms. At least the program suite from src/synt/misc is required in most
+cases.
+
+============================================================================
+
+Installation
+------------
+
+This software is part of the project Seitosh. See README.1st in the root
+directory of the collection or https://git.scc.kit.edu/Seitosh/Seitosh for
+general installation instructions.
+
+
+The Makefile supports program compilation and linking. Some binary libraries
+are required. 
+
+The command
+  make all
+will compile and install the binary executables as well as the doxygen
+documentation.
+
+Environment variables control where the results are stored and where
+libraries and library header files are expected:
+  LOCLIBDIR           defines location of binary libraries
+  LOCINCLUDEDIR       defines location of C/C++ header files (prototypes)
+  LOCBINDIR           defines location of binary executables
+  TF_WWWBASEDIR       defines location of doxygen output
+
+Dependencies:
+  Compilers required to build the programs:
+    Fortran compiler
+    C++ compiler
+    C/C++ preprocessor
+    doxygen (required to process source code documentation)
+
+  extern libraries/packages needed to compile the code
+    PGPLOT (libpgplot, libcpgplot)
+    liblapack:      linear algebra package
+    libblas:        basic linear algebra functions
+    libgsl:         GNU scientific library (libgsl, libgslcblas)
+    The header files for these libraries are required as well. Under OpenSuSE
+    you have to install the respective devel packages.
+  
+  Seitosh libraries required to compile the code:
+    libaff
+    libdatrwxx
+    libfapidxx
+    libfourier (libfourier, libfourierxx)
+    libgsexx
+    liblinearxx
+    libpgplotxx 
+    libseife (libcseife, libseife)
+    libsff
+    libsffu
+    libsffxx
+    libstfinv
+    libtf
+    libtfxx
+    libtime (libtime, libtime++)
+    libtsxx
+
+============================================================================
+
+The home of this software suite is
+https://git.scc.kit.edu/Seitosh/Seitosh/tree/master/src/ts/wf
+
+Please send bug reports and suggestions to
+Thomas.Forbriger@kit.edu
+
+----- END OF README ----- 

src/ts/croposp/doxydoc.cfg

+# Doxyfile 1.6.3
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+DOXYFILE_ENCODING      = UTF-8
+PROJECT_NAME           = "Waveform filter programs"
+PROJECT_NUMBER         =
+OUTPUT_DIRECTORY       = <OUTPUTDIRECTORY>
+CREATE_SUBDIRS         = NO
+OUTPUT_LANGUAGE        = English
+BRIEF_MEMBER_DESC      = YES
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+DISTRIBUTE_GROUP_DOC   = NO
+SUBGROUPING            = YES
+TYPEDEF_HIDES_STRUCT   = NO
+SYMBOL_CACHE_SIZE      = 0
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+EXTRACT_ALL            = YES
+EXTRACT_PRIVATE        = YES
+EXTRACT_STATIC         = YES
+EXTRACT_LOCAL_CLASSES  = YES
+EXTRACT_LOCAL_METHODS  = YES
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+SORT_MEMBERS_CTORS_1ST = NO
+SORT_GROUP_NAMES       = NO
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+GENERATE_TODOLIST      = YES
+GENERATE_TESTLIST      = YES
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+SHOW_NAMESPACES        = YES
+FILE_VERSION_FILTER    =
+LAYOUT_FILE            =
+#---------------------------------------------------------------------------
+# configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+QUIET                  = NO
+WARNINGS               = YES
+WARN_IF_UNDOCUMENTED   = YES
+WARN_IF_DOC_ERROR      = YES
+WARN_NO_PARAMDOC       = NO
+WARN_FORMAT            = "$file:$line: $text"
+WARN_LOGFILE           =
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+INPUT                  = 
+INPUT_ENCODING         = UTF-8
+FILE_PATTERNS          = *.cc *.f \
+                         *.h \
+                         doxygen*.txt
+RECURSIVE              = NO
+EXCLUDE                = 
+EXCLUDE_SYMLINKS       = NO
+EXCLUDE_PATTERNS       = *.bak
+EXCLUDE_SYMBOLS        =
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+EXAMPLE_PATTERNS       =
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+#---------------------------------------------------------------------------
+# configuration options related to source browsing
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+#---------------------------------------------------------------------------
+# configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+ALPHABETICAL_INDEX     = YES
+COLS_IN_ALPHA_INDEX    = 5
+IGNORE_PREFIX          =
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+GENERATE_HTML          = YES
+HTML_FOOTER_DESCRIPTION= NO
+HTML_OUTPUT            = html
+HTML_FILE_EXTENSION    = .html
+HTML_HEADER            =
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+HTML_TIMESTAMP         = YES
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