added perm plot

mlmc/src/stochastics/HybridFluxGenerator.C

@@ -14,22 +14,37 @@ void HybridFluxGenerator2D::GetFineSample(Vector &fineField) {
     Vector perm(cellMatrixGraph[l - meshes.pLevel()]);
     Vector solution(faceMatrixGraph[l - meshes.pLevel()]);
     permeabilityGenerator.GetFineSample(perm);
+
+    bool plotPermForTransport = false;
+    config.get("plotPermForTransport", plotPermForTransport);
+    if (plotPermForTransport) {
+        Plot plot(meshes[l], 2);
+        plot.celldata(perm, 1);
+        plot.vtk_celldata("permeability");
+    }
+
     assemble.problem->LoadNewSample(&perm);
 
     Preconditioner *pc = GetPC(faceMatrixGraph, assemble, "LIB_PS");
+
     Solver solver(pc, "GMRES");
+
     Newton newton(solver);
-    newton(assemble, solution);
-    assemble.setFlux(solution, fineField);
+
+    newton(assemble, solution
+
+    );
+    assemble.
+
+        setFlux(solution, fineField
+
+    );
 }
 
 void HybridFluxGenerator2D::GetCoarseSample(const Vector &fineField,
                                             Vector &coarseField) {
     coarseField = 0;
 
-    mout << OUTX(fineField) << endl;
-    mout << OUTX(coarseField) << endl;
-
     for (cell c = coarseField.cells(); c != coarseField.cells_end(); c++) {
         row coarseRow = coarseField.find_row(c());
         for (int k = 0; k < c.Children(); ++k) {
@@ -40,8 +55,4 @@ void HybridFluxGenerator2D::GetCoarseSample(const Vector &fineField,
         for (int i = 0; i < coarseRow.n(); ++i)
             coarseField(coarseRow, i) /= c.Children();
     }
-
-    mout << OUTX(fineField) << endl;
-    mout << OUTX(coarseField) << endl;
-
 }
\ No newline at end of file